Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792646.1_cds_XP_016513357.1_2513
CDS Infomation

[gene=LOC107830345] [db_xref=GeneID:107830345] [protein=aspartyl protease family protein 1-like] [protein_id=XP_016513357.1] [location=complement(join(14083..14303,14403..14474,15136..15193,15289..15388,15526..15599,15681..15816,15923..16147,16333..16568,17535..17673,17771..18057))] [gbkey=CDS]
Sequence

ATGTCTTCTTTCATTATTTTCTTTCTAACATTGCTCTCAATTCGACAATGCAGTGGGCGT
GTTTTCACATTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAG
AAAATAGGTGGTCCACTTCATAATTGGCCGGTCAAGGGAAGTCTTCAGTACTATACTCAG
TTAGCCAACCACGATAAGTTGTTACATGGTAGGAAGCTTTACAAATTTGGCGGACCACTT
ACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGTTTCCTGCATTATACT
ACAGTGACGTTGGGGACACCGGGGATGAAGTTTCTTGTGGCGCTTGATACTGGGAGTGAT
TTATTTTGGGTGCCTTGTGAATGCGGCAAATGTGCTTCTACTGATGATCCTACACTTTAC
AGCTCTGATTTTGAGCTTAGCATATACAGCCTGAACGGATCGTCAACTAGCAAGCAGGTC
ACCTGCAGTAATAGCTTGTGTACAGAGCGCAATAATTGCCTTGGTACATATAGCCACTGC
CCTTATTCAGTGTCCTATGTCTCCTCGGAAACTTCAACTTCAGGAATTTTAGTGGATGAT
ATTCTGCACTTGAGAACAGAAGACAATGAGAAAAAATTTGTCCAGGCGCGTGTGATCTTT
GGTTGTGGACAGGTGCAAACTGGTTCTTTTCTAGACGTTGCAGCACCAAACGGTTTATTT
GGGCTTGGTCTTGAGAAGATATCAGTCCCTAGTATTCTGTCTCGGGAAGGTTTTATGGCA
GATTCCTTCTCCATGTGCTTTGGTCATGATGGGGCAGGACGAATTAGTTTTGGAGACAAG
GGTAGCTTTGACCAGGAAGAGACCCCTTTTAATATAAACCCATTACACCCAACGTATAAC
ATTTCTGTAGATCAAATACGCGTTGGAACAACTCTTGTTGACTCAGGTTTTACAGCACTT
TTTGATACCGGGACGTCCTTCACATATCTTGCTGACCTATCCTATACAAAGCTTTCAGAG
AGTTTCCATTCTCAAGTACGAGACAAGCGGCTCCCACCTGATCCTAGGATCCCTTTTGAA
TATTGTTATGATATGAGTCCTGATGCAAATACGAGCTTGATTCCTAGTTTAAGCCTAACT
ATGAAAGGGGGAGGCCAACTTGTTGTCTATGATCCAATTATTGTTATATCCATGCAGAGT
CAACTCGTGTATTGCCTGGCTGTTGTGAAGAGTCAAGACCTAAATATAATTGGACAAAAC
TTCATGACTGGATACCGCTTTGTGTTTGATCGAGAAAAGGCCATTCTCGGTTGGAAGAAG
TTTGATTGTTATGAGATTGAAAAAATAGACCATTTCCCTTCAGAAGCCCTTAATACTACC
CGTGTGCCACCTGCTGTTGCTGTTGGGCCTGGAAATGATGATGCAGAAAAATCAGATGAA
AGGACTACAAATACTCCTCAAAGTTCTTTTGCATCATCAGTTTATCAAACATTTTATTTG
AACCTCATAAAATGCTACCTAGCATCTCTAACATTGCTACTTTTATAA

Peptide Sequence

PEP ID

XP_016513357.1
PEP Infomation

PREDICTED: aspartyl protease family protein 1-like [Nicotiana tabacum]
Sequence

MSSFIIFFLTLLSIRQCSGRVFTFEMHHRFSETVKKWSLQKIGGPLHNWPVKGSLQYYTQ
LANHDKLLHGRKLYKFGGPLTFSDGNSTFRISSLGFLHYTTVTLGTPGMKFLVALDTGSD
LFWVPCECGKCASTDDPTLYSSDFELSIYSLNGSSTSKQVTCSNSLCTERNNCLGTYSHC
PYSVSYVSSETSTSGILVDDILHLRTEDNEKKFVQARVIFGCGQVQTGSFLDVAAPNGLF
GLGLEKISVPSILSREGFMADSFSMCFGHDGAGRISFGDKGSFDQEETPFNINPLHPTYN
ISVDQIRVGTTLVDSGFTALFDTGTSFTYLADLSYTKLSESFHSQVRDKRLPPDPRIPFE
YCYDMSPDANTSLIPSLSLTMKGGGQLVVYDPIIVISMQSQLVYCLAVVKSQDLNIIGQN
FMTGYRFVFDREKAILGWKKFDCYEIEKIDHFPSEALNTTRVPPAVAVGPGNDDAEKSDE
RTTNTPQSSFASSVYQTFYLNLIKCYLASLTLLLL

Transcript Sequence

Gene sequence data has not been registered.